If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ), 'gf_id' => 'HOM05D000683', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000683' ), 'data_identifier' => 'HOM05D000683', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000683', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '837', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p34080' => 'bna', 'A05p05820' => 'bna', 'A06p18800' => 'bna', 'A06p34660' => 'bna', 'A07p25410' => 'bna', 'A09p13630' => 'bna', 'A09p53340' => 'bna', 'A09p53350' => 'bna', 'A09p53360' => 'bna', 'A09p53370' => 'bna', 'A09p66570' => 'bna', 'A10p05780' => 'bna', 'Aa31LG10G15350' => 'aar', 'Aa31LG10G15360' => 'aar', 'Aa31LG10G15610' => 'aar', 'Aa31LG11G3160' => 'aar', 'Aa31LG1G27280' => 'aar', 'Aa31LG1G6460' => 'aar', 'Aa31LG2G740' => 'aar', 'Aa31LG4G17470' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3385' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5079' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2437' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.534' => 'aag', 'Actinidia14550' => 'ach', 'Actinidia20925' => 'ach', 'Actinidia23235' => 'ach', 'Actinidia32856' => 'ach', 'Actinidia32857' => 'ach', 'Actinidia33427' => 'ach', 'Actinidia34117' => 'ach', 'Ah.05g176690' => 'amhyb', 'Ah.05g176700' => 'amhyb', 'Ah.05g176780' => 'amhyb', 'Ah.07g207180' => 'amhyb', 'Ah.08g221220' => 'amhyb', 'AL1G17360' => 'aly', 'AL2G11810' => 'aly', 'AL4G45040' => 'aly', 'AL4G45050' => 'aly', 'AL5G28490' => 'aly', 'AL5G43550' => 'aly', 'AL5G43560' => 'aly', 'AL6G35110' => 'aly', 'Aqoxy2G00898' => 'aox', 'Aqoxy4G02556' => 'aox', 'Aqoxy5G04008' => 'aox', 'arahy.Tifrunner.gnm1.ann1.077RRC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Z9HD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3N0VG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.56XTX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6IF8U5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0KNJI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DD0WDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JTFZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JYW8E9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5BSX2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S60DDY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2CR8C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YI44QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YV8AP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6KLKQ' => 'arhy', 'AT1G07220' => 'ath', 'AT1G63420' => 'ath', 'AT2G45830' => 'ath', 'AT2G45840' => 'ath', 'AT3G48980' => 'ath', 'AT3G61270' => 'ath', 'AT3G61280' => 'ath', 'AT3G61290' => 'ath', 'AT5G23850' => 'ath', 'ATR0618G450' => 'atr', 'ATR0763G070' => 'atr', 'ATR1126G035' => 'atr', 'Atru.chr1.454' => 'acertr', 'Atru.chr3.4214_Atru.chr3.4215' => 'acertr', 'Atru.chr5.473' => 'acertr', 'Atru.chr5.474' => 'acertr', 'Atru.chr9.2216' => 'acertr', 'AUR62001641' => 'cqu', 'AUR62004331' => 'cqu', 'AUR62004332' => 'cqu', 'AUR62004333' => 'cqu', 'AUR62004334' => 'cqu', 'AUR62015979' => 'cqu', 'AUR62020136' => 'cqu', 'AUR62021187' => 'cqu', 'AUR62033305' => 'cqu', 'AUR62033306' => 'cqu', 'AUR62033307' => 'cqu', 'AUR62033308' => 'cqu', 'AUR62033309' => 'cqu', 'AUR62033310' => 'cqu', 'AUR62033311' => 'cqu', 'AUR62033348' => 'cqu', 'AUR62033349' => 'cqu', 'AUR62033350' => 'cqu', 'AUR62033351' => 'cqu', 'AUR62043395' => 'cqu', 'AUR62043396' => 'cqu', 'AUR62043397' => 'cqu', 'BcaB01g00763' => 'bca', 'BcaB02g07381' => 'bca', 'BcaB02g09003' => 'bca', 'BcaB04g16958' => 'bca', 'BcaB07g31578' => 'bca', 'BcaC02g07059' => 'bca', 'BcaC02g07062' => 'bca', 'BcaC02g12175' => 'bca', 'BcaC02g12176' => 'bca', 'BcaC02g12177' => 'bca', 'BcaC04g22698' => 'bca', 'BcaC07g39371' => 'bca', 'BcaC07g40628' => 'bca', 'BcaC07g42019' => 'bca', 'BcaC07g42453' => 'bca', 'BcaC07g42668' => 'bca', 'BcaC07g42669' => 'bca', 'BcaC07g42670' => 'bca', 'BcaC08g45116' => 'bca', 'BcaNung01841' => 'bca', 'BcaNung05466' => 'bca', 'BcaNung06896' => 'bca', 'BolC4t22296H' => 'bol', 'BolC4t22297H' => 'bol', 'BolC4t22298H' => 'bol', 'BolC4t22299H' => 'bol', 'BolC4t28686H' => 'bol', 'BolC5t29301H' => 'bol', 'BolC6t37903H' => 'bol', 'BolC7t44912H' => 'bol', 'BolC8t50018H' => 'bol', 'BolC8t51196H' => 'bol', 'BolC8t51197H' => 'bol', 'BolC8t51199H' => 'bol', 'BolC8t51200H' => 'bol', 'BolC8t52603H' => 'bol', 'BolC9t54539H' => 'bol', 'BraA04t18869Z' => 'bra', 'BraA05t19547Z' => 'bra', 'BraA06t24959Z' => 'bra', 'BraA06t26393Z' => 'bra', 'BraA07t30185Z' => 'bra', 'BraA09t37016Z' => 'bra', 'BraA09t40759Z' => 'bra', 'BraA09t40760Z' => 'bra', 'BraA09t40761Z' => 'bra', 'BraA09t40762Z' => 'bra', 'BraA09t40763Z' => 'bra', 'BraA09t41995Z' => 'bra', 'BraA10t42839Z' => 'bra', 'C04p06750' => 'bna', 'C04p06760' => 'bna', 'C04p06770' => 'bna', 'C04p31450' => 'bna', 'C04p71880' => 'bna', 'C05p05300' => 'bna', 'C06p27340' => 'bna', 'C07p43840' => 'bna', 'C08p23940' => 'bna', 'C08p36140' => 'bna', 'C08p36150' => 'bna', 'C08p36170' => 'bna', 'C08p36180' => 'bna', 'C08p50750' => 'bna', 'C09p16290' => 'bna', 'CAN.G104.1' => 'can', 'CAN.G307.2' => 'can', 'CAN.G394.130' => 'can', 'CAN.G490.35' => 'can', 'CAN.G490.37' => 'can', 'CAN.G529.2' => 'can', 'CAN.G78.43' => 'can', 'CAN.G78.44' => 'can', 'CANSAT21G0317' => 'cansat', 'CANSAT21G0741' => 'cansat', 'CANSAT21G0811' => 'cansat', 'CANSAT21G0860' => 'cansat', 'CANSAT21G1350' => 'cansat', 'CANSAT54G2204' => 'cansat', 'CANSAT56G3307' => 'cansat', 'CARHR006940' => 'chi', 'CARHR047930' => 'chi', 'CARHR141100' => 'chi', 'CARHR157780' => 'chi', 'CARHR157790' => 'chi', 'CARHR171570' => 'chi', 'CARHR171580' => 'chi', 'CARHR171590' => 'chi', 'CARHR171600' => 'chi', 'CARHR189710' => 'chi', 'Carub.0001s0652' => 'cru', 'Carub.0002s0146' => 'cru', 'Carub.0004s2853' => 'cru', 'Carub.0004s2854' => 'cru', 'Carub.0005s1515' => 'cru', 'Carub.0005s2793' => 'cru', 'Carub.0005s2794' => 'cru', 'Carub.0005s2795' => 'cru', 'Carub.0005s2796' => 'cru', 'Carub.0006s2157' => 'cru', 'Ca_14939_v3' => 'car', 'Ca_23657_v3' => 'car', 'Cc01_g14250' => 'ccan', 'Cc02_g02900' => 'ccan', 'Cc02_g02910' => 'ccan', 'Cc02_g02920' => 'ccan', 'Cc02_g02930' => 'ccan', 'Cc02_g02940' => 'ccan', 'Cc02_g02950' => 'ccan', 'Cc02_g37780' => 'ccan', 'Cc08_g05850' => 'ccan', 'Cc08_g14470' => 'ccan', 'CDE11G0989' => 'cde', 'Cfa000399' => 'cfa', 'Cfa003948' => 'cfa', 'Cfa003949' => 'cfa', 'Cfa008324' => 'cfa', 'Cfa012149' => 'cfa', 'Cfa012150' => 'cfa', 'Cfa012153' => 'cfa', 'Ciclev10004696m.g' => 'ccl', 'Ciclev10006549m.g' => 'ccl', 'Ciclev10007061m.g' => 'ccl', 'Ciclev10019647m.g' => 'ccl', 'Ciclev10019760m.g' => 'ccl', 'Ciclev10023948m.g' => 'ccl', 'Ciclev10028388m.g' => 'ccl', 'CiPaw.01G058500' => 'cil', 'CiPaw.01G058600' => 'cil', 'CiPaw.01G058700' => 'cil', 'CiPaw.01G058800' => 'cil', 'CiPaw.03G106800' => 'cil', 'CiPaw.03G106900' => 'cil', 'CiPaw.11G137600' => 'cil', 'CiPaw.13G077100' => 'cil', 'CiPaw.14G059200' => 'cil', 'ClCG01G002880' => 'cla', 'ClCG03G000750' => 'cla', 'ClCG05G008000' => 'cla', 'ClCG05G008010' => 'cla', 'ClCG05G008050' => 'cla', 'ClCG06G003850' => 'cla', 'COL.COLO4_12683' => 'col', 'COL.COLO4_12685' => 'col', 'COL.COLO4_12686' => 'col', 'COL.COLO4_12687' => 'col', 'COL.COLO4_14314' => 'col', 'COL.COLO4_14315' => 'col', 'COL.COLO4_14316' => 'col', 'COL.COLO4_19162' => 'col', 'COL.COLO4_33555' => 'col', 'COL.COLO4_34436' => 'col', 'Cpa.g.sc107.57' => 'cpa', 'Cpa.g.sc112.24' => 'cpa', 'Cpa.g.sc18.236' => 'cpa', 'Cpa.g.sc18.237' => 'cpa', 'Cre12.g531750' => 'cre', 'CsaV3_1G036190' => 'csa', 'CsaV3_3G017050' => 'csa', 'CsaV3_3G017060' => 'csa', 'CsaV3_3G017110' => 'csa', 'CsaV3_5G002970' => 'csa', 'CsaV3_6G000440' => 'csa', 'CSS0003444' => 'camsi', 'CSS0004798' => 'camsi', 'CSS0010341' => 'camsi', 'CSS0012909' => 'camsi', 'CSS0014502' => 'camsi', 'CSS0020236' => 'camsi', 'CSS0023874' => 'camsi', 'CSS0024736' => 'camsi', 'CSS0026233' => 'camsi', 'CSS0029778' => 'camsi', 'CSS0030044' => 'camsi', 'CSS0039209' => 'camsi', 'CSS0040045' => 'camsi', 'CSS0041338' => 'camsi', 'CSS0047462' => 'camsi', 'DCAR_002793' => 'dca', 'DCAR_004292' => 'dca', 'DCAR_004646' => 'dca', 'DCAR_005844' => 'dca', 'DCAR_005890' => 'dca', 'DCAR_010306' => 'dca', 'DCAR_010307' => 'dca', 'DCAR_014512' => 'dca', 'DCAR_025177' => 'dca', 'DCAR_025179' => 'dca', 'Dinv14433' => 'din', 'Dinv14434' => 'din', 'Dinv28438' => 'din', 'Dinv28644' => 'din', 'Dinv32461' => 'din', 'Dinv35214' => 'din', 'Dinv37660' => 'din', 'Duzib068G0335' => 'dzi', 'Duzib068G0575' => 'dzi', 'Duzib138G0277' => 'dzi', 'Duzib138G0355' => 'dzi', 'Duzib168G2131' => 'dzi', 'Duzib205G0378' => 'dzi', 'Duzib205G0423' => 'dzi', 'ECA232G1688' => 'eca', 'ECA233G3093' => 'eca', 'ECA234G2838' => 'eca', 'ECA234G3814' => 'eca', 'ECA236G3621' => 'eca', 'ECA236G4542' => 'eca', 'ECA247G2836' => 'eca', 'ECA248G1119' => 'eca', 'EL10Ac1g00544' => 'bvu', 'EL10Ac1g00545' => 'bvu', 'EL10Ac3g05637' => 'bvu', 'EL10Ac7g16172' => 'bvu', 'Eucgr.A02783' => 'egr', 'Eucgr.D01866' => 'egr', 'Eucgr.D01868' => 'egr', 'Eucgr.D02274' => 'egr', 'Eucgr.E00163' => 'egr', 'Eucgr.E00165' => 'egr', 'Eucgr.E00166' => 'egr', 'Eucgr.E00167' => 'egr', 'Eucgr.E00168' => 'egr', 'Eucgr.E00171' => 'egr', 'Eucgr.I01244' => 'egr', 'Eucgr.J01883' => 'egr', 'FAN01G1482' => 'fan', 'FAN01G2539' => 'fan', 'FAN03G0100' => 'fan', 'FAN03G1894' => 'fan', 'FAN03G3112' => 'fan', 'FAN03G3411' => 'fan', 'FAN04G0532' => 'fan', 'FAN04G1906' => 'fan', 'FAN04G2557' => 'fan', 'FAN06G2848' => 'fan', 'FAN06G2892' => 'fan', 'FAN06G3869' => 'fan', 'FAN06G4379' => 'fan', 'FAN06G4458' => 'fan', 'FAN10G1246' => 'fan', 'FAN10G2255' => 'fan', 'FAN10G2267' => 'fan', 'FAN11G1195' => 'fan', 'FAN13G0412' => 'fan', 'FAN13G0705' => 'fan', 'FAN13G1425' => 'fan', 'FAN13G2130' => 'fan', 'FAN16G3659' => 'fan', 'FAN16G3724' => 'fan', 'FAN18G0040' => 'fan', 'FAN21G0686' => 'fan', 'FAN25G2098' => 'fan', 'FvH4_3g38610' => 'fve', 'FvH4_5g02040' => 'fve', 'FvH4_5g02041' => 'fve', 'FvH4_7g13870' => 'fve', 'FvH4_7g29530' => 'fve', 'FvH4_7g29540' => 'fve', 'Glyma.01G218400' => 'gma', 'Glyma.03G012800' => 'gma', 'Glyma.03G012900' => 'gma', 'Glyma.03G013800' => 'gma', 'Glyma.07G072600' => 'gma', 'Glyma.07G073400' => 'gma', 'Glyma.09G138300' => 'gma', 'Glyma.09G261300' => 'gma', 'Glyma.11G174900' => 'gma', 'Glyma.16G182833' => 'gma', 'Glyma.16G183900' => 'gma', 'Glyma.16G186001' => 'gma', 'Glyma.16G186051' => 'gma', 'Glyma.16G188900' => 'gma', 'Glyma.16G189000' => 'gma', 'Glyma.16G191600' => 'gma', 'Glyma.16G192400' => 'gma', 'Glyma.18G062600' => 'gma', 'Glyma.U008001' => 'gma', 'Glyma.U044100' => 'gma', 'Gohir.A07G104300' => 'ghi', 'Gohir.A08G130400' => 'ghi', 'Gohir.A11G087300' => 'ghi', 'Gohir.A11G087400' => 'ghi', 'Gohir.A11G087500' => 'ghi', 'Gohir.A12G105500' => 'ghi', 'Gohir.A12G227400' => 'ghi', 'Gohir.A12G257400' => 'ghi', 'Gohir.D07G108100' => 'ghi', 'Gohir.D08G151800' => 'ghi', 'Gohir.D11G091700' => 'ghi', 'Gohir.D11G091800' => 'ghi', 'Gohir.D11G091900' => 'ghi', 'Gohir.D11G091950' => 'ghi', 'Gohir.D12G109400' => 'ghi', 'Gohir.D12G229700' => 'ghi', 'Gohir.D12G258700' => 'ghi', 'Gorai.001G116200' => 'gra', 'Gorai.004G157700' => 'gra', 'Gorai.007G097800' => 'gra', 'Gorai.007G097900' => 'gra', 'Gorai.007G098000' => 'gra', 'Gorai.008G118500' => 'gra', 'Gorai.008G246000' => 'gra', 'Gorai.008G277100' => 'gra', 'GSVIVG01019779001' => 'vvi', 'GSVIVG01024736001' => 'vvi', 'GSVIVG01026871001' => 'vvi', 'GSVIVG01026872001' => 'vvi', 'GSVIVG01026873001' => 'vvi', 'GSVIVG01026874001' => 'vvi', 'GSVIVG01026876001' => 'vvi', 'GSVIVG01026877001' => 'vvi', 'GSVIVG01026878001' => 'vvi', 'GSVIVG01028968001' => 'vvi', 'GSVIVG01028972001' => 'vvi', 'HanXRQChr03g0078171' => 'han', 'HanXRQChr05g0146371' => 'han', 'HanXRQChr06g0169671' => 'han', 'HanXRQChr06g0169681' => 'han', 'HanXRQChr06g0169871' => 'han', 'HanXRQChr08g0229381' => 'han', 'HanXRQChr09g0253641' => 'han', 'HanXRQChr09g0261721' => 'han', 'HanXRQChr10g0279641' => 'han', 'HanXRQChr10g0279651' => 'han', 'HanXRQChr10g0279661' => 'han', 'HanXRQChr10g0304131' => 'han', 'HanXRQChr13g0402241' => 'han', 'HanXRQChr13g0402251' => 'han', 'HanXRQChr17g0561541' => 'han', 'Haze_06515' => 'cav', 'Haze_08877' => 'cav', 'Haze_08879' => 'cav', 'Haze_13683' => 'cav', 'Haze_13688' => 'cav', 'Haze_13697' => 'cav', 'Haze_13698' => 'cav', 'Haze_15473' => 'cav', 'Haze_15474' => 'cav', 'Haze_15475' => 'cav', 'Haze_24331' => 'cav', 'Hma1.2p1_0033F.1_g020320' => 'hma', 'Hma1.2p1_0033F.1_g020330' => 'hma', 'Hma1.2p1_1438F.1_g283360' => 'hma', 'Hma1.2p1_1922F.1_g307580' => 'hma', 'HPP92_011658' => 'vpl', 'HPP92_011706' => 'vpl', 'HPP92_014734' => 'vpl', 'Hund04744' => 'sun', 'Hund04857' => 'sun', 'Hund08346' => 'sun', 'Hund11745' => 'sun', 'Hund16936' => 'sun', 'Hund27136' => 'sun', 'Hund27137' => 'sun', 'Hund27138' => 'sun', 'Hund27139' => 'sun', 'Lalb_Chr01g0009341' => 'lal', 'Lalb_Chr10g0097131' => 'lal', 'Lalb_Chr16g0377141' => 'lal', 'Lalb_Chr18g0050961' => 'lal', 'Lj1A997T37' => 'lonja', 'Lj1g0022966' => 'lja', 'Lj2A1082G55' => 'lonja', 'Lj2g0012068' => 'lja', 'Lj2g0025752' => 'lja', 'Lj3g0017905' => 'lja', 'Lj3g0028222' => 'lja', 'Lj6g0001482' => 'lja', 'Lj7A515T87' => 'lonja', 'Lj7A515T88' => 'lonja', 'Lj8A23G65' => 'lonja', 'Lj8A24T36' => 'lonja', 'Lj9A581G67' => 'lonja', 'LjContig00312_ERROPOS870357g0016987' => 'lja', 'Lsat_1_v5_gn_4_36440' => 'lsa', 'Lsat_1_v5_gn_7_5080' => 'lsa', 'Lsat_1_v5_gn_8_70961' => 'lsa', 'Lsat_1_v5_gn_8_8541' => 'lsa', 'Lsat_1_v5_gn_8_8581' => 'lsa', 'Lsat_1_v5_gn_9_20021' => 'lsa', 'Lsat_1_v5_gn_9_55841' => 'lsa', 'Manes.01G063300' => 'mes', 'Manes.01G259300' => 'mes', 'Manes.02G119200' => 'mes', 'Manes.05G036800' => 'mes', 'Manes.06G147600' => 'mes', 'Manes.06G147700' => 'mes', 'Manes.14G025800' => 'mes', 'Mapoly0062s0046' => 'mpo', 'MBI05_g05304_MAGBIO' => 'mbi', 'MBI18_g20584_MAGBIO' => 'mbi', 'MBI18_g20585_MAGBIO' => 'mbi', 'MBI18_g20588_MAGBIO' => 'mbi', 'MBI18_g30546_MAGBIO' => 'mbi', 'MBI18_g34054_MAGBIO' => 'mbi', 'MBI18_g37163_MAGBIO' => 'mbi', 'MCO10G124' => 'mco', 'MD01G1055200' => 'mdo', 'MD01G1201400' => 'mdo', 'MD01G1201500' => 'mdo', 'MD02G1213900' => 'mdo', 'MD03G1069900' => 'mdo', 'MD06G1079900' => 'mdo', 'MD07G1269900' => 'mdo', 'MD08G1162800' => 'mdo', 'MD11G1073700' => 'mdo', 'MD12G1116200' => 'mdo', 'MD16G1185500' => 'mdo', 'MD17G1174000' => 'mdo', 'Medtr0014s0440' => 'mtr', 'Medtr3g464000' => 'mtr', 'Medtr5g010500' => 'mtr', 'Medtr7g076860' => 'mtr', 'Medtr7g076890' => 'mtr', 'Medtr8g031290' => 'mtr', 'Medtr8g031450' => 'mtr', 'Medtr8g031470' => 'mtr', 'MELO3C000083.2' => 'cme', 'MELO3C006902.2' => 'cme', 'MELO3C006903.2' => 'cme', 'MELO3C006909.2' => 'cme', 'MELO3C020547.2' => 'cme', 'MELO3C021220.2' => 'cme', 'Migut.B01728' => 'egut', 'Migut.B01729' => 'egut', 'Migut.F01116' => 'egut', 'MSTRG.17256' => 'ama', 'MSTRG.8459' => 'ama', 'MSTRG.89' => 'ama', 'Nitab4.5_0001842g0010' => 'nta', 'Nitab4.5_0001842g0040' => 'nta', 'Nitab4.5_0002117g0020' => 'nta', 'Nitab4.5_0002117g0030' => 'nta', 'Nitab4.5_0002160g0120' => 'nta', 'Nitab4.5_0002262g0020' => 'nta', 'Nitab4.5_0002262g0030' => 'nta', 'Nitab4.5_0003931g0040' => 'nta', 'Nitab4.5_0007346g0040' => 'nta', 'Nitab4.5_0007346g0050' => 'nta', 'Nitab4.5_0007346g0080' => 'nta', 'Nitab4.5_0010620g0010' => 'nta', 'Nitab4.5_0010812g0010' => 'nta', 'Nitab4.5_0020829g0010' => 'nta', 'Nn1g01469' => 'nnu', 'Nn1g01472' => 'nnu', 'Nn2g11509' => 'nnu', 'Nn6g33488' => 'nnu', 'Nn6g33489' => 'nnu', 'Oeu053285.1' => 'oeu', 'Oeu056259.2' => 'oeu', 'Oeu056359.1' => 'oeu', 'Oeu056360.1' => 'oeu', 'Oeu056363.1' => 'oeu', 'Oeu056364.1' => 'oeu', 'Os02g0642700' => 'osa', 'Os04g0534000' => 'osa', 'Os04g0534100' => 'osa', 'Os05g0149500' => 'osa', 'Os06g0152700' => 'osa', 'Os08g0101800' => 'osa', 'Peaxi162Scf00056g00128' => 'pax', 'Peaxi162Scf00078g00244' => 'pax', 'Peaxi162Scf00191g01321' => 'pax', 'Peaxi162Scf00444g00858' => 'pax', 'Peaxi162Scf00444g00859' => 'pax', 'Peaxi162Scf00540g00043' => 'pax', 'Peaxi162Scf00540g00313' => 'pax', 'PGR031G0059' => 'pgr', 'PGR031G0592' => 'pgr', 'PGR042G0206' => 'pgr', 'PGR042G0317' => 'pgr', 'PGR042G2889' => 'pgr', 'PGR119G0583' => 'pgr', 'PGSC0003DMG400000028' => 'stu', 'PGSC0003DMG400000252' => 'stu', 'PGSC0003DMG400014295' => 'stu', 'PGSC0003DMG400021652' => 'stu', 'PGSC0003DMG400030358' => 'stu', 'Phvul.004G116050' => 'pvu', 'Phvul.006G068300' => 'pvu', 'Phvul.010G096100' => 'pvu', 'Phvul.010G096500' => 'pvu', 'Phvul.010G096516' => 'pvu', 'Potri.001G106500' => 'ptr', 'Potri.001G252000' => 'ptr', 'Potri.002G157800' => 'ptr', 'Potri.002G157900' => 'ptr', 'Potri.003G125000' => 'ptr', 'Potri.014G081600' => 'ptr', 'Potri.015G144400' => 'ptr', 'Prupe.2G164600' => 'ppe', 'Prupe.2G164700' => 'ppe', 'Prupe.2G164900' => 'ppe', 'Prupe.2G165100' => 'ppe', 'Prupe.2G165200' => 'ppe', 'Prupe.2G294800' => 'ppe', 'Prupe.2G294900' => 'ppe', 'Prupe.5G097300' => 'ppe', 'Prupe.6G057000' => 'ppe', 'Psat0s1136g0040' => 'psa', 'Psat0s748g0040' => 'psa', 'Psat3g110360' => 'psa', 'Psat4g154200' => 'psa', 'Psat4g154280' => 'psa', 'Psat4g154360' => 'psa', 'Psat4g202760' => 'psa', 'Psat5g158480' => 'psa', 'Psat7g056120' => 'psa', 'PSO017G1495' => 'pso', 'PSO017G1857' => 'pso', 'PSO017G6415' => 'pso', 'PSO063G4748' => 'pso', 'PSO063G5483' => 'pso', 'PSO063G7608' => 'pso', 'PSO170G6304' => 'pso', 'PSO339G0764' => 'pso', 'PSO339G5451' => 'pso', 'PSO478G4224' => 'pso', 'PSO541G1946' => 'pso', 'PSO541G4262' => 'pso', 'PSO541G4604' => 'pso', 'PSO675G1033' => 'pso', 'PSO675G2875' => 'pso', 'PSO675G6829' => 'pso', 'PSO801G0773' => 'pso', 'QL01p038359' => 'qlo', 'QL02p092574' => 'qlo', 'QL08p049209' => 'qlo', 'QL08p049247' => 'qlo', 'QL08p049262' => 'qlo', 'QL08p049285' => 'qlo', 'QL08p049327' => 'qlo', 'QL08p049331' => 'qlo', 'QL08p049340' => 'qlo', 'QL08p049394' => 'qlo', 'QL08p049406' => 'qlo', 'QL08p049426' => 'qlo', 'QL09p014053' => 'qlo', 'QL09p014066' => 'qlo', 'QL12p018277' => 'qlo', 'RcHm_v2.0_Chr1g0354091' => 'rch', 'RcHm_v2.0_Chr1g0377371' => 'rch', 'RcHm_v2.0_Chr1g0377381' => 'rch', 'RcHm_v2.0_Chr5g0069671' => 'rch', 'RcHm_v2.0_Chr7g0198281' => 'rch', 'Rhsim01G0151800' => 'rsi', 'Rhsim01G0151900' => 'rsi', 'Rhsim02G0227000' => 'rsi', 'Rhsim02G0227100' => 'rsi', 'Rhsim03G0181100' => 'rsi', 'Rhsim03G0181200' => 'rsi', 'Rhsim03G0181400' => 'rsi', 'Rhsim03G0181500' => 'rsi', 'Rhsim03G0181600' => 'rsi', 'Rhsim03G0181700' => 'rsi', 'Rhsim03G0181800' => 'rsi', 'Rhsim03G0181900' => 'rsi', 'Rhsim03G0182100' => 'rsi', 'Rhsim03G0182900' => 'rsi', 'Rhsim03G0183300' => 'rsi', 'Rhsim03G0183400' => 'rsi', 'Rhsim03G0183500' => 'rsi', 'Rhsim03G0183600' => 'rsi', 'Rhsim03G0183700' => 'rsi', 'Rhsim03G0183800' => 'rsi', 'Rhsim03G0183900' => 'rsi', 'Rhsim03G0184000' => 'rsi', 'Rhsim03G0184100' => 'rsi', 'Rhsim03G0184200' => 'rsi', 'Rhsim03G0184400' => 'rsi', 'Rhsim03G0184500' => 'rsi', 'Rhsim03G0184900' => 'rsi', 'Rhsim03G0185200' => 'rsi', 'Rhsim03G0185300' => 'rsi', 'Rhsim03G0185400' => 'rsi', 'Rhsim07G0017300' => 'rsi', 'Rhsim13G0069100' => 'rsi', 'RhsimUnG0069200' => 'rsi', 'RhsimUnG0069300' => 'rsi', 'RhsimUnG0098800' => 'rsi', 'Sabra02G0125500' => 'sbr', 'Sabra03G0088500' => 'sbr', 'Sabra14G0059400' => 'sbr', 'Sabra15G0154000' => 'sbr', 'Sabra16G0153300' => 'sbr', 'SalBow2G0449' => 'sbo', 'SalBow3G0154' => 'sbo', 'SalBow3G0157' => 'sbo', 'SalBow5G1270' => 'sbo', 'SalBow5G1288' => 'sbo', 'SalBow5G2720' => 'sbo', 'SalBow5G5587' => 'sbo', 'SalBow5G5722' => 'sbo', 'Sc12g0000660' => 'sci', 'Sc13g0006500' => 'sci', 'Sc13g0008710' => 'sci', 'Sc23g0003030' => 'sci', 'Sc23g0003040' => 'sci', 'Sc26g0000940' => 'sci', 'Sc26g0000950' => 'sci', 'Sed0003010' => 'sed', 'Sed0011825' => 'sed', 'Sed0019719' => 'sed', 'Sed0019740' => 'sed', 'Sed0020167' => 'sed', 'Sed0022847' => 'sed', 'Sed0028069' => 'sed', 'SEGI_01356' => 'sgi', 'SEGI_09750' => 'sgi', 'SEGI_14670' => 'sgi', 'SEGI_27195' => 'sgi', 'SEGI_28308' => 'sgi', 'SEGI_29362' => 'sgi', 'SEGI_34341' => 'sgi', 'SEGI_37076' => 'sgi', 'SGA_v2.0_scaffold113G31724' => 'sas', 'SGA_v2.0_scaffold20G09303' => 'sas', 'SGA_v2.0_scaffold277G46665' => 'sas', 'SGA_v2.0_scaffold5913G54653' => 'sas', 'SGA_v2.0_scaffold95G28849' => 'sas', 'SHI13773' => 'shi', 'SMO111G0041' => 'smo', 'SMO116G0227' => 'smo', 'SMO118G0070' => 'smo', 'SMO143G0055' => 'smo', 'SMO146G0040' => 'smo', 'SMO203G0091' => 'smo', 'SMO203G0212' => 'smo', 'SMO239G0157' => 'smo', 'SMO265G0043' => 'smo', 'SMO356G0025' => 'smo', 'SMO356G0141' => 'smo', 'SMO356G0327' => 'smo', 'Solyc01g094380.2' => 'sly', 'Solyc01g094390.2' => 'sly', 'Solyc03g025760.4' => 'sly', 'Solyc03g025770.4' => 'sly', 'Solyc03g025780.3' => 'sly', 'Solyc05g048800.3' => 'sly', 'Solyc06g076980.4' => 'sly', 'Sopen01g038170' => 'spe', 'Sopen01g038180' => 'spe', 'Sopen03g004580' => 'spe', 'Sopen03g004590' => 'spe', 'Sopen05g028120' => 'spe', 'Sopen06g033380' => 'spe', 'Sp1g05980' => 'spa', 'Sp2g01190' => 'spa', 'Sp2g23440' => 'spa', 'Sp4g27900' => 'spa', 'Sp4g27910' => 'spa', 'Sp5g02090' => 'spa', 'Sp5g02100' => 'spa', 'Sp5g13070' => 'spa', 'TAR367G0003' => 'tar', 'TAR367G0005' => 'tar', 'TAR375G0418' => 'tar', 'TAR375G1035' => 'tar', 'TAR629G0542' => 'tar', 'TAR633G0068' => 'tar', 'TAR636G1685' => 'tar', 'THA.LOC104802024' => 'tha', 'THA.LOC104802025' => 'tha', 'THA.LOC104809397' => 'tha', 'THA.LOC104815804' => 'tha', 'THA.LOC104817286' => 'tha', 'THA.LOC104821544' => 'tha', 'THA.LOC104827593' => 'tha', 'Thecc.01G362200' => 'tca', 'Thecc.01G362300' => 'tca', 'Thecc.01G362400' => 'tca', 'Thecc.03G047900' => 'tca', 'Thecc.03G177200' => 'tca', 'Thecc.03G276300' => 'tca', 'Thecc.07G143600' => 'tca', 'Thecc.07G144000' => 'tca', 'Thecc.09G220500' => 'tca', 'Thecc.09G301300' => 'tca', 'Thecc.10G125200' => 'tca', 'Thhalv10001309m.g' => 'esa', 'Thhalv10003948m.g' => 'esa', 'Thhalv10005889m.g' => 'esa', 'Thhalv10006441m.g' => 'esa', 'Thhalv10007804m.g' => 'esa', 'Thhalv10010269m.g' => 'esa', 'Thhalv10023375m.g' => 'esa', 'TPR.G21165' => 'tpr', 'TPR.G29446' => 'tpr', 'TPR.G36205' => 'tpr', 'TPR.G37762' => 'tpr', 'TPR.G40301' => 'tpr', 'TPR.G4443' => 'tpr', 'TPR.G6647' => 'tpr', 'TPR.G7183' => 'tpr', 'TPR.G8029' => 'tpr', 'TPR.G8031' => 'tpr', 'TPR.G8159' => 'tpr', 'TPR.G8958' => 'tpr', 'TWI15G0516' => 'twi', 'TWI23G0832' => 'twi', 'TWI23G1195' => 'twi', 'TWI31G0041' => 'twi', 'TWI59G0865' => 'twi', 'TWI59G1058' => 'twi', 'TWI60G0554' => 'twi', 'unitig_0.g1272' => 'ugi', 'unitig_0.g452' => 'ugi', 'unitig_0.g453' => 'ugi', 'unitig_0.g454' => 'ugi', 'unitig_0.g455' => 'ugi', 'unitig_26.g9735' => 'ugi', 'unitig_61.g26289' => 'ugi', 'unitig_61.g26290' => 'ugi', 'unitig_899.g15362' => 'ugi', 'vmacro02958' => 'vma', 'vmacro06678' => 'vma', 'vmacro11310' => 'vma', 'vmacro20946' => 'vma', 'vmacro20947' => 'vma', 'vmacro20948' => 'vma', 'vmacro20949' => 'vma', 'vmacro20950' => 'vma', 'vmacro20951' => 'vma', 'VMungo0331G0207' => 'vmu', 'VMungo0331G0290' => 'vmu', 'VMungo0433G0001' => 'vmu', 'VMungo0464G0862' => 'vmu', 'VMungo0540G0137' => 'vmu', 'VMungo0951G0001' => 'vmu', 'Zm00001eb075570' => 'zma', 'Zm00001eb185970' => 'zma', 'Zm00001eb198660' => 'zma', 'Zm00001eb376690' => 'zma', 'Zm00001eb418150' => 'zma', 'Zm00001eb427410' => 'zma' ) $gf_id = 'HOM05D000683' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000683' ) $data_identifier = 'HOM05D000683' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 27, 'aar' => (int) 8, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 9, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 22, 'bca' => (int) 22, 'bol' => (int) 15, 'bra' => (int) 13, 'can' => (int) 8, 'cansat' => (int) 7, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 2, 'ccan' => (int) 10, 'cde' => (int) 1, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 6, 'col' => (int) 10, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 15, 'dca' => (int) 10, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 4, 'egr' => (int) 12, 'fan' => (int) 27, 'fve' => (int) 6, 'gma' => (int) 20, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 11, 'han' => (int) 15, 'cav' => (int) 11, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 9, 'lal' => (int) 4, 'lonja' => (int) 7, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 8, 'cme' => (int) 6, 'egut' => (int) 3, 'ama' => (int) 3, 'nta' => (int) 14, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppe' => (int) 9, 'psa' => (int) 9, 'pso' => (int) 17, 'qlo' => (int) 15, 'rch' => (int) 5, 'rsi' => (int) 35, 'sbr' => (int) 5, 'sbo' => (int) 8, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 8, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 7, 'tca' => (int) 11, 'esa' => (int) 7, 'tpr' => (int) 12, 'twi' => (int) 7, 'ugi' => (int) 9, 'vma' => (int) 9, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427410' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1